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GB/T 38164-2019Identification of animal ingredients from common livestock and poultry - Real-time PCR (English PDF)

常见畜禽动物源性成分检测方法 实时荧光PCR法

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Issued by

SAMR; SAC

Level / Type

National · Recommended

Issue date

October 18, 2019

Implementation date

October 18, 2019

Scope

GB/T 38164-2019 is the English-translated version of 常见畜禽动物源性成分检测方法 实时荧光PCR法.

GB/T 38164-2019 gives a real-time PCR method for telling which animal species a sample contains.

It is used for the qualitative Taqman probe determination of ingredients from cattle, yak, buffalo, sheep, goat, pig, camel, red deer, sika deer, reindeer, rabbit, dog, chicken, duck, goose, quail, pigeon, turkey, cat, fox, mink, raccoon and rat in meat and processed products, offal, milk and animal feed, with a limit of detection of 1 % by mass fraction.

It sets out the principle, the species-specific primer and probe sequences together with the internal reference pair, the reagents and how they are prepared, the instruments, the inspection procedure from sample pre-treatment and DNA extraction to amplification, the quality control, how the result is judged and expressed, and the measures against cross-contamination. It was issued on 18 October 2019 and has applied since 18 October 2019.

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Document preview — GB/T 38164-2019

National Standard of the People's Republic of China

ICS
7.08
Classification
A40

Issued by: State Administration for Market Regulation; Standardization Administration of the PRC

Contents

  • Foreword3
  • 1 Scope4
  • 2 Normative references4
  • 3 Terms and definitions, abbreviated terms4
  • 4 Principle5
  • 5 Primers and probes for detection5
  • 6 Reagents7
  • 7 Instruments and equipment8
  • 8 Inspection procedures9
  • 9 Quality control10
  • 10 Result judgment and expression11
  • 11 Measures to prevent cross-contamination during the testing process11
  • Appendix A (Informative) Gene amplification target sequences of various animal- derived ingredients12

1 Scope

This Standard specifies the real-time PCR for the identification of animal ingredient from common livestock and poultry.

This Standard applies to the Taqman probe real-time PCR qualitative determination of species ingredients from cattle, yak, buffalo, sheep, goat, pig, camel, red deer, sika deer, reindeer, rabbit, dog, chicken, duck, goose, quail, pigeon, turkey, cat, fox, mink, raccoon, and rat in meat and processed products, offal, milk, and animal feed. Limit of detection (LOD) 1% (mass fraction).

2 Normative references

The following documents, in whole or in part, are normatively referenced in this document and are indispensable for its application. For dated references, only the edition cited applies. For undated references, the latest edition of the referenced document (including any amendments) applies.

GB/T 6682, Water for analytical laboratory use - Specification and test methods

GB/T 27403-2008, Criterion on quality control of laboratories - Molecular biological testing of food

GB/T 34796, Quantification and purity analysis of nucleic acid concentration in solution - Ultraviolet spectrophotometry

GB/T 35918, Identification of animal origin in animal products by DNA barcoding - Sanger sequencing

3 Terms and definitions, abbreviated terms

3.1 Terms and definitions

For the purposes of this document, the following terms and definitions apply.

3.1.1 Real-time PCR

Add a fluorescent group to the PCR reaction system, and monitor the entire PCR amplification process in real time by the accumulation of fluorescence signals.

3.1.2 Cycle threshold

The number of cycles required for the fluorescence signal in each reaction tube to reach the set threshold.

3.2 Abbreviated terms

For the purposes of this document, the following abbreviated terms apply.

ATP8: ATP synthase subunit 8

COI: Cytochrome Coxidase I

CTAB: Cetyltrithylammonium bromide

cytb: Cytochrome b

DNA: Deoxyribonucleic acid

D-loop: Displacement loop region

EDTA: Ethylene diaminetetraacetic acid

Na2-EDTA: Ethylenediaminetetraacetic acid disodium salt

ND1: Nicotinamide adenine dinucleotide oxidoreductase subunit 1

Taq DNA polymerase: Taq DNA polymerase

Tris: Tris hydroxymethyl aminomethane

4 Principle

Perform real-time PCR amplification of animal ingredient from livestock and poultry using species-specific primers and probes; use the fluorescence signal of each cycle product in the PCR amplification reaction for identification, enabling qualitative detection of animal ingredient from common livestock and poultry.

5 Primers and probes for detection

The internal reference primer and probe sequences and common livestock and poultry-specific primer and probe sequences are shown in Table 1.

6 Reagents

6.3 Absolute ethanol.

6.4 Sodium hydroxide solution (10 mol/L). Add 80.0 g of sodium hydroxide (NaOH) to 160 mL of double-distilled water; dissolve; cool to room temperature; then add double-distilled water to fix he volume to 200 mL.

6.5 Na2-EDTA solution (500 mmol/L, pH 8.0). Weigh 18.6 g of Na2-EDTA; add it to 70 mL of double-distilled water; then add an appropriate amount of sodium hydroxide solution (6.4); heat until it is completely dissolved; cool to room temperature; use sodium hydroxide solution (6.4) to adjust the pH to 8.0; add double-distilled water to fix the volume to 100 mL. Sterilize at 103.4 kPa (121 °C) for 20 min.

6.6 Tris-HCl solution (1 mol/L, pH 8.0). Weigh 121.1 g of Tris and dissolve it in 800 mL of double-distilled water; use HCl to adjust the pH to 8.0; add double-distilled water to bring the volume to 1000 mL. Sterilize at 103.4 kPa (121 °C) for 20 min.

6.7 CTAB extraction buffer (pH 8.0). Weigh 4.0 g of CTAB and 16.364 g of NaCl; add 20 mL of 1 mol/L Tris-HCl solution (pH 8.0) (6.6) and 8 mL of 500 mmol/L Na2-EDTA solution (pH 8.0); dissolve in 70 mL of double-distilled water; then bring the volume to 200 mL and sterilize at 103.4 kPa (121 °C) for 20 min.

6.8 CTAB precipitate. Weigh 1.0 g of CTAB and 0.467 g of NaCl; dissolve them in 70 mL of double-distilled water; then bring the volume to 200 mL; sterilize at 103.4 kPa (121°C) for 20 min.

6.9 Proteinase K (670 U/mL). Weigh 0.10 g of proteinase K dry powder with an enzyme activity of 33.5 U/mg (Unit, enzyme unit); add 5 mL of double-distilled water; shake gently until proteinase K is completely dissolved; aliquot into small portions and store at -20 °C.

6.10 PCR Master Mix (2×), or an equivalent real-time PCR premix can be used.

7 Instruments and equipment

7.1 Real-time PCR instrument.

7.2 Nucleic acid protein analyzer or ultraviolet spectrometer.

7.3 Constant temperature water bath.

7.4 Centrifuge: centrifugal force >=12 000 g.

7.5 pH meter: grade 0.01.

7.6 Balance: sensitivity 0.1 g, 0.01 g, 0.001 g.

8 Inspection procedures

8.1 Sample pretreatment

8.1.1 General

Pre-treat the samples; then divide them into three equal parts, including the sample to be tested, the sample to be retested, and the sample to be retained.

8.1.2 Solid samples

Use 70% ethanol and double-distilled water to rinse 2 ~ 3 times respectively; then collect in a clean 50 mL centrifuge tube or a clean sealed bag; freeze at -20 °C or below.

8.1.3 Semi-solid and liquid samples

After mixing, dispense directly into clean 50 mL centrifuge tubes or clean sealed bags; store at -20 °C or below.

8.2 DNA extraction

Extract according to the method of GB/T 35918. Alternatively, exact DNA using an equivalent DNA extraction kit.

8.3 Determination of DNA concentration and purity

Determine and calculate the concentration of DNA according to the method in GB/T 34796, and determine the purity of the DNA.

Note: Before performing a fluorescence PCR amplification test, the DNA concentration should be diluted to the range of 5 ng/µL ~ 50 ng/µL.

8.4 Real-time PCR amplification

Set up positive controls, negative controls, and blank controls during the testing process.

Use samples containing the target ingredient or positive plasmids containing the target fragment as positive controls, samples without the target ingredient or negative plasmids without the target fragment as negative controls, and double-distilled water as blank controls.

Set up two parallel reaction systems for the sample and control, for target gene and internal reference gene amplification separately; take the average Ct value as the final result. The volume of the reaction system shall be 25 µL. The system composition is shown in Table 2, and the reaction parameters are shown in Table 3. […]

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This preview omits tables, figures, formulas and parts of the technical clauses. The complete document — 15 pages — is available in the English PDF.

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